2JU1
Solution structure of acyl carrier protein domain from module 2 of 6-deoxyerythronolide B synthase (DEBS)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
2 | 3D 1H-13C/15N NOESY | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
3 | 3D HCCH-TOCSY | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
4 | 3D HNHA | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
5 | 2D 1H-15N HSQC | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
6 | 3D HNCACB | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 | |
7 | 3D C(CO)NH | 0.8-1 mM [U-13C; U-15N] acyl carrier protein | 90% H2O/10% D2O | 30 | 5.5 | ambient | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Varian | INOVA | 500 |
3 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | The standard simulated annealing protocol included as part of DYANA software was used with 4000 steps per structure. | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 30 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | DYANA | 1.5 | Guntert, P. et al. |
2 | refinement | DYANA | 1.5 | Guntert, P. et al. |