2K2V
Anabaena CcbP in the calcium-bound form
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-13C NOESY | 1 mM [U-100% 13C; U-100% 15N] protein, 40 mM CALCIUM ION, 20 mM TRIS, 220 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 0.32 | 7.4 | ambient | 303 | |
2 | 3D 1H-15N NOESY | 1 mM [U-100% 15N] protein, 40 mM CALCIUM ION, 20 mM TRIS, 220 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 0.32 | 7.4 | ambient | 303 | |
3 | 3D HCCH-COSY | 1 mM [U-100% 13C; U-100% 15N] protein, 40 mM CALCIUM ION, 20 mM TRIS, 220 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 0.32 | 7.4 | ambient | 303 | |
4 | 3D HCCH-TOCSY | 1 mM [U-100% 13C; U-100% 15N] protein, 40 mM CALCIUM ION, 20 mM TRIS, 220 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 0.32 | 7.4 | ambient | 303 | |
5 | 3D HNCO | 1 mM [U-100% 13C; U-100% 15N] protein, 40 mM CALCIUM ION, 20 mM TRIS, 220 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 0.32 | 7.4 | ambient | 303 | |
6 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] protein, 40 mM CALCIUM ION, 20 mM TRIS, 220 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 0.32 | 7.4 | ambient | 303 | |
7 | 3D CBCA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] protein, 40 mM CALCIUM ION, 20 mM TRIS, 220 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 0.32 | 7.4 | ambient | 303 | |
8 | 2D 1H-13C HSQC | 1 mM [U-100% 13C; U-100% 15N] protein, 40 mM CALCIUM ION, 20 mM TRIS, 220 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 0.32 | 7.4 | ambient | 303 | |
9 | 2D 1H-15N HSQC | 1 mM [U-100% 15N] protein, 40 mM CALCIUM ION, 20 mM TRIS, 220 mM sodium chloride, 10 mM DTT | 90% H2O/10% D2O | 0.32 | 7.4 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker Biospin |
2 | processing | NMRPipe | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | data analysis | NMRView | 5 | Johnson, One Moon Scientific |
4 | peak picking | NMRView | 5 | Johnson, One Moon Scientific |
5 | chemical shift assignment | NMRView | 5 | Johnson, One Moon Scientific |
6 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
7 | structure solution | CYANA | 2.0 | Guntert, Mumenthaler and Wuthrich |
8 | refinement | Amber | 7.0 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm |
9 | data analysis | SANE | Duggan, Legge, Dyson, Wright | |
10 | data analysis | MOLMOL | 2K.2 | Koradi, Billeter and Wuthrich |
11 | data analysis | ProcheckNMR | Laskowski and MacArthur |