2KE0
Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D CBCA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] potassium phosphate-1 | 95% H2O/5% D2O | 7 | 1 atm | 298 | ||
2 | 3D HNCACB | 0.5 mM [U-100% 13C; U-100% 15N] potassium phosphate-1 | 95% H2O/5% D2O | 7 | 1 atm | 298 | ||
3 | 3D HNCA | 0.5 mM [U-100% 13C; U-100% 15N] potassium phosphate-1 | 95% H2O/5% D2O | 7 | 1 atm | 298 | ||
4 | 3D HN(CO)CA | 0.5 mM [U-100% 13C; U-100% 15N] potassium phosphate-1 | 95% H2O/5% D2O | 7 | 1 atm | 298 | ||
5 | 3D HCCH-TOCSY | 0.5 mM [U-100% 13C; U-100% 15N] potassium phosphate-1 | 95% H2O/5% D2O | 7 | 1 atm | 298 | ||
6 | 3D 1H-13C NOESY | 0.5 mM [U-100% 13C; U-100% 15N] potassium phosphate-1 | 95% H2O/5% D2O | 7 | 1 atm | 298 | ||
7 | 2D 1H-15N HSQC | 0.6 mM [U-100% 15N] potassium phosphate-2 | 95% H2O/5% D2O | 7 | 1 atm | 298 | ||
8 | 3D 1H-15N NOESY | 0.6 mM [U-100% 15N] potassium phosphate-2 | 95% H2O/5% D2O | 7 | 1 atm | 298 | ||
9 | 2D 1H-15N HSQC | 0.6 mM [U-100% 15N] potassium phosphate-3 | 100% D2O | 7 | 1 atm | 298 | ||
10 | 2D 1H-1H TOCSY | 0.6 mM [U-100% 15N] potassium phosphate-3 | 100% D2O | 7 | 1 atm | 298 | ||
11 | 2D 1H-1H NOESY | 0.6 mM [U-100% 15N] potassium phosphate-3 | 100% D2O | 7 | 1 atm | 298 | ||
12 | 3D 1H-15N TOCSY | 0.6 mM [U-100% 15N] potassium phosphate-2 | 95% H2O/5% D2O | 7 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 600 |
2 | Bruker | AMX | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest target function) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.1 | P.GUNTERT ET AL. |
2 | refinement | CYANA | 2.1 | P.GUNTERT ET AL. |
3 | chemical shift assignment | CcpNmr Analysis | 1.0 | CCPN |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |