2KEB
NMR solution structure of the N-terminal domain of the DNA polymerase alpha p68 subunit
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.75 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.05 | 6.5 | ambient | 298 | |
2 | 3D 1H-15N NOESY | 0.75 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.05 | 6.5 | ambient | 298 | |
3 | 3D 1H-13C NOESY | 0.75 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.05 | 6.5 | ambient | 298 | |
4 | 4D 1H-13C NOESY | 0.75 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.05 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 600 |
3 | Bruker | AVANCE | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CYANA | 2.1 | Guntert, P. et al. |
2 | structure solution | CYANA | 2.1 | Guntert, P. et al. |
3 | refinement | Amber | 9 | Case, D. et al. |