2KHH
Structural requirements for the UBA domain of the mRNA export factor Mex67 to bind its specific targets, the transcription elongation Tho complex component Hpr1 and nucleoporin FxFG repeats
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N] Mex67-1, 5 mM FxFG-2, 25 mM sodium phosphate-3, 50 mM sodium chloride-4 | 90% H2O/10% D2O | 7.4 | ambient | 300 | ||
2 | 2D 1H-13C HSQC | 1 mM [U-100% 13C; U-100% 15N] Mex67-1, 5 mM FxFG-2, 25 mM sodium phosphate-3, 50 mM sodium chloride-4 | 90% H2O/10% D2O | 7.4 | ambient | 300 | ||
3 | 3D CBCA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] Mex67-1, 5 mM FxFG-2, 25 mM sodium phosphate-3, 50 mM sodium chloride-4 | 90% H2O/10% D2O | 7.4 | ambient | 300 | ||
4 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] Mex67-1, 5 mM FxFG-2, 25 mM sodium phosphate-3, 50 mM sodium chloride-4 | 90% H2O/10% D2O | 7.4 | ambient | 300 | ||
5 | 3D HBHA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] Mex67-1, 5 mM FxFG-2, 25 mM sodium phosphate-3, 50 mM sodium chloride-4 | 90% H2O/10% D2O | 7.4 | ambient | 300 | ||
6 | 3D HCCH-TOCSY | 1 mM [U-100% 13C; U-100% 15N] Mex67-1, 5 mM FxFG-2, 25 mM sodium phosphate-3, 50 mM sodium chloride-4 | 90% H2O/10% D2O | 7.4 | ambient | 300 | ||
7 | 3D HCCH-COSY | 1 mM [U-100% 13C; U-100% 15N] Mex67-1, 5 mM FxFG-2, 25 mM sodium phosphate-3, 50 mM sodium chloride-4 | 90% H2O/10% D2O | 7.4 | ambient | 300 | ||
8 | 3D 1H-13C NOESY | 1 mM [U-100% 13C; U-100% 15N] Mex67-1, 5 mM FxFG-2, 25 mM sodium phosphate-3, 50 mM sodium chloride-4 | 90% H2O/10% D2O | 7.4 | ambient | 300 | ||
9 | 3D 1H-15N NOESY | 1 mM [U-100% 13C; U-100% 15N] Mex67-1, 5 mM FxFG-2, 25 mM sodium phosphate-3, 50 mM sodium chloride-4 | 90% H2O/10% D2O | 7.4 | ambient | 300 | ||
10 | 2D 1H-1H TOCSY | 5 mM FxFG-5, 25 mM sodium phosphate-6, 50 mM sodium chloride-7 | 90% H2O/10% D2O | 7.4 | ambient | 300 | ||
11 | 2D 1H-1H NOESY | 5 mM FxFG-5, 25 mM sodium phosphate-6, 50 mM sodium chloride-7 | 90% H2O/10% D2O | 7.4 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.6 | Bruker Biospin |
2 | processing | XwinNMR | 3.6 | Bruker Biospin |
3 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | chemical shift assignment | CCPNMR | 1.0.18 | CCPN |
5 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
6 | refinement | TALOS | Cornilescu, Delaglio and Bax |