2KHT
NMR Structure of human alpha defensin HNP-1
SOLID-STATE NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 13C-13C DARR 40 ms, 100 ms & 200 ms | Polycrystalline sample grown from 60% w/v PEG400, 30 mM Cacodylate, 60 mM Lithium Sulfate | 6.5 | 1 atm | 268 | |||
2 | 2D 15N-15N PDSD 3 s | Polycrystalline sample grown from 60% w/v PEG400, 30 mM Cacodylate, 60 mM Lithium Sulfate | 6.5 | 1 atm | 268 | |||
3 | 2D CM5RR 0.8 ms & 1.5 ms | Polycrystalline sample grown from 60% w/v PEG400, 30 mM Cacodylate, 60 mM Lithium Sulfate | 6.5 | 1 atm | 253 | |||
4 | 2D CHHC 200 us & 300 us | Polycrystalline sample grown from 60% w/v PEG400, 30 mM Cacodylate, 60 mM Lithium Sulfate | 6.5 | 1 atm | 253 | |||
5 | 3D 15N-13C-13C NCACX | Polycrystalline sample grown from 60% w/v PEG400, 30 mM Cacodylate, 60 mM Lithium Sulfate | 6.5 | 1 atm | 268 | |||
6 | 3D 15N-13C-13C NCOCX | Polycrystalline sample grown from 60% w/v PEG400, 30 mM Cacodylate, 60 mM Lithium Sulfate | 6.5 | 1 atm | 268 | |||
7 | 2D 15N-13C NCX | Polycrystalline sample grown from 60% w/v PEG400, 30 mM Cacodylate, 60 mM Lithium Sulfate | 6.5 | 1 atm | 253 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing, simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (minimized average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR NIH | 2.21 | Schwieters, Kuszewski, Tjandra and Clore |
2 | chemical shift assignment | Sparky | 3.113 | Goddard |
3 | processing | TopSpin | 1.3 | Bruker Biospin |
4 | refinement | UCSF-Chimera | 1.3 | Pettersen, E.F., Goddard, T.D., Huang, C.C., Couch, G.S., Greenblatt, D.M., Meng, E.C., and Ferrin, T.E |