2KSM
Central B domain of Rv0899 from Mycobacterium tuberculosis
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.7 mM [U-99% 15N] Rv0899(73-220), 1 mM [U-99% 13C; U-99% 15N] Rv0899(73-220) | 95% H2O/5% D2O | 0.005 | 7.0 | ambient | 313 | |
2 | IPAP | 0.4 mM [U-99% 15N] Rv0899(73-220) | 95% H2O/5% D2O | 0.005 | 7.0 | ambient | 313 | |
5 | 2D 1H-13C HSQC | 1.7 mM [U-99% 15N] Rv0899(73-220), 1 mM [U-99% 13C; U-99% 15N] Rv0899(73-220) | 95% H2O/5% D2O | 0.005 | 7.0 | ambient | 313 | |
6 | 3D HNCA | 1.7 mM [U-99% 15N] Rv0899(73-220), 1 mM [U-99% 13C; U-99% 15N] Rv0899(73-220) | 95% H2O/5% D2O | 0.005 | 7.0 | ambient | 313 | |
7 | 3D HNCACB | 1.7 mM [U-99% 15N] Rv0899(73-220), 1 mM [U-99% 13C; U-99% 15N] Rv0899(73-220) | 95% H2O/5% D2O | 0.005 | 7.0 | ambient | 313 | |
8 | 3D C(CO)NH | 1.7 mM [U-99% 15N] Rv0899(73-220), 1 mM [U-99% 13C; U-99% 15N] Rv0899(73-220) | 95% H2O/5% D2O | 0.005 | 7.0 | ambient | 313 | |
9 | 3D HCCH-TOCSY | 1 mM [U-99% 13C; U-99% 15N] Rv0899(73-220), 0.3 mM [U-99% 15N] Rv0899(73-220) | 100% D2O | 0.005 | 7.0 | ambient | 313 | |
10 | 3D 1H-15N NOESY | 1.7 mM [U-99% 15N] Rv0899(73-220), 1 mM [U-99% 13C; U-99% 15N] Rv0899(73-220) | 95% H2O/5% D2O | 0.005 | 7.0 | ambient | 313 | |
11 | 3D 1H-15N TOCSY | 1.7 mM [U-99% 15N] Rv0899(73-220), 1 mM [U-99% 13C; U-99% 15N] Rv0899(73-220) | 95% H2O/5% D2O | 0.005 | 7.0 | ambient | 313 | |
12 | 3D 1H-13C NOESY | 1.7 mM [U-99% 15N] Rv0899(73-220), 1 mM [U-99% 13C; U-99% 15N] Rv0899(73-220) | 95% H2O/5% D2O | 0.005 | 7.0 | ambient | 313 | |
13 | 3D HNCO | 1.7 mM [U-99% 15N] Rv0899(73-220), 1 mM [U-99% 13C; U-99% 15N] Rv0899(73-220) | 95% H2O/5% D2O | 0.005 | 7.0 | ambient | 313 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | XPLOR-NIH, XPLOR-NIH internal variable dynamics module (IVM) | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 3.0 | Delaglio, F. et al. |
2 | data analysis | Sparky | 3.115 | Goddard, T.D. et al. |
3 | chemical shift calculation | TALOS | Cornilescu, G. et al. | |
4 | refinement | X-PLOR NIH | 2.24 | Schwieters, C.D. et al. |
5 | rdc analysis | REDCAT | Valafar, H. et al. | |
6 | structure analysis | PyMOL | DeLano, W.L. et al. |