2KSQ
The myristoylated yeast ARF1 in a GTP and bicelle bound conformation
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCA | 0.8 mM [U-13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
2 | 3D HNCACB | 0.8 mM [U-13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
3 | 3D HN(CO)CA | 0.8 mM [U-13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
4 | 3D C-excited C-CmHm TOCSY | 0.8 mM [VI(d1)L-methyl-1H,13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
5 | 3D NOESY-CH-HMQC | 0.8 mM [VI(d1)L-methyl-1H,13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
6 | 3D NOESY-NH-TROSY | 0.8 mM [VI(d1)L-methyl-1H,13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
7 | 3D NOESY-aromCH-CT-TROSY | 0.8 mM [PHE-1H,13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
8 | 3D HCCH-TOCSY | 0.8 mM [PHE-1H,13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
9 | 3D NOESY-NH-TROSY | 0.8 mM [PHE-1H,13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
10 | 3D NOESY-NH-TROSY | 0.8 mM [U-100% 13C; U-100% 15N; U-70% 2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
11 | 2D HSQC-TROSY | 0.8 mM [U-13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
12 | 2D Jmod-NC' | 0.8 mM [U-13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
13 | 2D Jmod-NH | 0.8 mM [U-13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
14 | 2D 1H-15N fast HSQC | 0.3 mM [U-15N; 70%-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
15 | 2D 1H-R1 HSQC | 0.3 mM [U-15N; 70%-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 | |
16 | 2D arom-CT-TROSY 1H IPAP | 0.8 mM [PHE-1H,13C; U-15N; U-2H] protein | 95% H2O/5% D2O | 0.1 | 7 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 800 |
3 | Varian | INOVA | 900 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | VNMRJ |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 280 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMRJ | Varian | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | SPARKY | Goddard | |
4 | structure solution | X-PLOR_NIH | Schwieters, Kuszewski, Tjandra and Clore | |
5 | refinement | X-PLOR_NIH | Schwieters, Kuszewski, Tjandra and Clore |