2L2S
Solution structure of peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with 1-{[(4-methylphenyl)thio]acetyl}piperidine
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCA | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
2 | 3D HNCACB | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
3 | 3D HN(CO)CA | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
4 | 3D CBCA(CO)NH | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
5 | 2D 1H-15N HSQC | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
6 | 2D 1H-1H TOCSY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 100% D2O | 100 | 7 | 1 atm | 298 | |
7 | 2D 1H-1H NOESY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 100% D2O | 100 | 7 | 1 atm | 298 | |
8 | 2D 1H-15N HSQC | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 100% D2O | 100 | 7 | 1 atm | 298 | |
9 | 3D 1H-15N NOESY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
10 | 3D 1H-15N TOCSY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 95% H2O/5% D2O | 100 | 7 | 1 atm | 298 | |
11 | 3D HCCH-TOCSY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 100% D2O | 100 | 7 | 1 atm | 298 | |
12 | 3D 1H-13C NOESY | 0.6-1.5 mM [U-99% 13C; U-99% 15N] isomerase | 100% D2O | 100 | 7 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
3 | chemical shift assignment | Analysis | CCPN | |
4 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |