2L97
Solution structure of HtrA PDZ domain from Streptococcus pneumoniae
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
4 | 3D HNCACB | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
5 | 3D C(CO)NH | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
6 | 3D HBHA(CO)NH | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
7 | 3D H(CCO)NH | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
8 | 3D HCCH-TOCSY | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
9 | 3D 1H-15N NOESY | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
10 | 3D 1H-13C NOESY | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 | |
11 | 3D HCCH-COSY | 0.6mM [U-99% 13C; U-99% 15N] HtrA-PDZ; 100mM sodium chloride; 25mM sodium phosphate; 2mM DTT; 1.5mM EDTA; 90% H2O/10% D2O | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
NMR Refinement | ||
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Method | Details | Software |
distance geometry | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |