2LNV
Solution structure of GspC-HR of typeII secretion system
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
2 | 3D HNCACB | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
3 | 3D CBCA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
4 | 3D 1H-15N TOCSY | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
5 | 3D 1H-15N NOESY | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
6 | 3D HNHA | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
7 | 3D HNCO | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
8 | 2D 1H-13C HSQC | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
9 | 3D HBHA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
10 | 3D 1H-13C NOESY aliphatic | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
11 | 3D HNCA | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 | |
12 | 2D 1H-15N HSQC | 0.5 mM [U-100% 13C; U-100% 15N] D2O | 90% H2O/10% D2O | 0 | 7.0 | ambient | 288 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
2 | Bruker | AVANCE | 600 |
3 | Varian | INOVA | 800 |
4 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | TALOS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
2 | refinement | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | collection | TopSpin | Bruker Biospin | |
5 | collection | VNMR | Varian |