2LYY
NMR structure of the protein NB7890A from Shewanella sp
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide | 95% H2O/5% D2O | 0.220 | 6.5 | ambient | 298 | |
2 | 3D 1H-13C NOESY aliphatic | 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide | 95% H2O/5% D2O | 0.220 | 6.5 | ambient | 298 | |
3 | 3D 1H-13C NOESY aromatic | 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide | 95% H2O/5% D2O | 0.220 | 6.5 | ambient | 298 | |
4 | 3D 1H-15N NOESY | 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide | 95% H2O/5% D2O | 0.220 | 6.5 | ambient | 298 | |
5 | 3D HNCA | 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide | 95% H2O/5% D2O | 0.220 | 6.5 | ambient | 298 | |
6 | 3D HNCACB | 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide | 95% H2O/5% D2O | 0.220 | 6.5 | ambient | 298 | |
7 | 3D CBCA(CO)NH | 1.2 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide | 95% H2O/5% D2O | 0.220 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. | |
2 | refinement | OPALp | Luginbuhl, Guntert, Billeter and Wuthrich |