2MNZ
NMR Structure of KDM5B PHD1 finger in complex with H3K4me0(1-10aa)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.8-2 mM [U-99% 13C; U-99% 15N] entity_1-1 | 90% H2O/10% D2O | 0.1 | 7.4 | ambient | 293 | |
2 | 2D 1H-13C HSQC | 0.8-2 mM [U-99% 13C; U-99% 15N] entity_1-1 | 90% H2O/10% D2O | 0.1 | 7.4 | ambient | 293 | |
3 | 2D 1H-13C HSQC aliphatic | 0.8-2 mM [U-99% 13C; U-99% 15N] entity_1-1 | 90% H2O/10% D2O | 0.1 | 7.4 | ambient | 293 | |
4 | 2D 1H-13C HSQC aromatic | 0.8-2 mM [U-99% 13C; U-99% 15N] entity_1-1 | 90% H2O/10% D2O | 0.1 | 7.4 | ambient | 293 | |
5 | 3D HNCO | 0.8-2 mM [U-99% 13C; U-99% 15N] entity_1-1 | 90% H2O/10% D2O | 0.1 | 7.4 | ambient | 293 | |
6 | 3D HNCA | 0.8-2 mM [U-99% 13C; U-99% 15N] entity_1-1 | 90% H2O/10% D2O | 0.1 | 7.4 | ambient | 293 | |
7 | 3D HNCACB | 0.8-2 mM [U-99% 13C; U-99% 15N] entity_1-1 | 90% H2O/10% D2O | 0.1 | 7.4 | ambient | 293 | |
8 | 3D 1H-15N NOESY | 0.8-2 mM [U-99% 13C; U-99% 15N] entity_1-1 | 90% H2O/10% D2O | 0.1 | 7.4 | ambient | 293 | |
9 | 3D 1H-13C NOESY aliphatic | 0.8-2 mM [U-99% 13C; U-99% 15N] entity_1-1 | 90% H2O/10% D2O | 0.1 | 7.4 | ambient | 293 | |
10 | 3D 1H-13C NOESY aromatic | 0.8-2 mM [U-99% 13C; U-99% 15N] entity_1-1 | 90% H2O/10% D2O | 0.1 | 7.4 | ambient | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. |