2N02
Solution structure of the A147T variant of the mitochondrial translocator protein (tspo) in complex with pk11195
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
2 | 2D 1H-13C HSQC aliphatic | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
3 | 2D 1H-13C HSQC aromatic | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
4 | 3D CBCA(CO)NH | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
5 | 3D HNCO | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
6 | 3D HNCA | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
7 | 3D HNCACB | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
8 | 3D HN(CO)CA | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
9 | 3D HCCH-TOCSY | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T | 100% D2O | 10 | 6.0 | AMBIENT | 315 | |
10 | 3D 1H-15N NOESY | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
11 | 3D 1H-13C NOESY aliphatic | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
12 | 3D 1H-13C NOESY aromatic | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
13 | 3D HNCACB | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T, 0.3-0.7 mM [U-100% 13C; U-100% 15N; U-80% 2H] TRANSLOCATOR PROTEIN A147T | 90% H2O/10% D2O | 10 | 6.0 | AMBIENT | 315 | |
14 | 3D 1H-13C NOESY aliphatic | 0.3-0.7 mM [U-100% 13C; U-100% 15N] TRANSLOCATOR PROTEIN A147T | 100% D2O | 10 | 6.0 | AMBIENT | 315 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 900 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CYANA_3.0 |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 105 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA_3.0 | Guntert, Mumenthaler and Wuthrich | |
2 | chemical shift assignment | Sparky | Goddard | |
3 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | data analysis | CARA | Keller and Wuthrich | |
6 | refinement | X-PLOR NIH |