2RO4
RDC-refined Solution Structure of the N-terminal DNA Recognition Domain of the Bacillus subtilis Transition-state Regulator AbrB
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20mM potassium phosphate, 15mM potassium chloride, 1mM EDTA, 1mM DTT, 0.02% sodium azide | 90% H2O/10% D2O | 15 | 5.8 | ambient | 305 | |
2 | 2D 1H-15N IPAP HSQC | 20mM potassium phosphate, 15mM potassium chloride, 1mM EDTA, 1mM DTT, 0.02% sodium azide | 90% H2O/10% D2O | 15 | 5.8 | ambient | 305 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
DGSA-distance geometry simulated annealing | The structures are based on 3090 NOE-derived distance constraints, 48 hydrogen bonds, 140 dihedral angle restraints, and 48 residual dipolar couplings restraints | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | Experiments to measure residual dipolar couplings were collected and used to refine the previously released structure of AbrBN |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | data analysis | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
2 | structure solution | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
3 | data analysis | NMRView | 5.0 | Johnson, One Moon Scientific |
4 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | refinement | ARIA | 1.2 | Linge, O'Donoghue and Nilges |