Starting Model(s)
| Initial Refinement Model(s) |
|---|
| Type | Source | Accession Code | Details |
|---|
|
experimental model | PDB | 1LNF | |
Crystallization
| Crystalization Experiments |
|---|
| ID | Method | pH | Temperature | Details |
|---|
| 1 | | 7.5 | | pH 7.5 |
| Crystal Properties |
|---|
| Matthews coefficient | Solvent content |
|---|
| 2.43 | 49.42 |
Crystal Data
| Unit Cell |
|---|
| Length ( Å ) | Angle ( ˚ ) |
|---|
| a = 94.145 | α = 90 |
| b = 94.145 | β = 90 |
| c = 131.616 | γ = 120 |
| Symmetry |
|---|
| Space Group | P 61 2 2 |
|---|
Diffraction
| Diffraction Experiment |
|---|
| ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol |
|---|
| 1 | 1 | x-ray | 293 | CCD | | | 1998-07-01 | M | SINGLE WAVELENGTH |
| Radiation Source |
|---|
| ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
|---|
| 1 | SYNCHROTRON | SRS BEAMLINE PX9.6 | | SRS | PX9.6 |
Data Collection
| Overall |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot |
|---|
| 1 | 1.65 | 20 | 100 | 0.076 | 6.2 | 5 | | 41876 | | | |
| Highest Resolution Shell |
|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) |
|---|
| 1.65 | 1.74 | 100 | | 0.352 | 1.8 | 5.1 | |
Refinement
| Statistics |
|---|
| Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Work (Depositor) | R-Work (DCC) | R-Free (Depositor) | R-Free (DCC) | Mean Isotropic B |
|---|
| X-RAY DIFFRACTION | ISOMORPHOUS REPLACEMENT | THROUGHOUT | 1LNF | 1.65 | 20 | 39760 | | 100 | 0.1625 | 0.1505 | 0.187 | 0.1782 | 19.1 |
| Temperature Factor Modeling |
|---|
| Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] |
|---|
| | | | | |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| p_transverse_tor | 22.4 |
| p_staggered_tor | 15.3 |
| p_scangle_it | 6.149 |
| p_scbond_it | 4.43 |
| p_planar_tor | 4.3 |
| p_mcangle_it | 2.723 |
| p_mcbond_it | 2.162 |
| p_multtor_nbd | 0.358 |
| p_singtor_nbd | 0.173 |
| p_chiral_restr | 0.141 |
| RMS Deviations |
|---|
| Key | Refinement Restraint Deviation |
|---|
| p_transverse_tor | 22.4 |
| p_staggered_tor | 15.3 |
| p_scangle_it | 6.149 |
| p_scbond_it | 4.43 |
| p_planar_tor | 4.3 |
| p_mcangle_it | 2.723 |
| p_mcbond_it | 2.162 |
| p_multtor_nbd | 0.358 |
| p_singtor_nbd | 0.173 |
| p_chiral_restr | 0.141 |
| p_xyhbond_nbd | 0.102 |
| p_planar_d | 0.036 |
| p_angle_d | 0.03 |
| p_bond_d | 0.016 |
| p_angle_deg | |
| p_hb_or_metal_coord | |
| p_plane_restr | |
| p_xhyhbond_nbd | |
| p_orthonormal_tor | |
| p_special_tor | |
| Non-Hydrogen Atoms Used in Refinement |
|---|
| Non-Hydrogen Atoms | Number |
|---|
| Protein Atoms | 2469 |
| Nucleic Acid Atoms | |
| Solvent Atoms | 207 |
| Heterogen Atoms | 26 |
Software
| Software |
|---|
| Software Name | Purpose |
|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
