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N- and C-terminal helices of oat LOV2 (404-546) are involved in light-induced signal transduction (room temperature (293K) dark structure of LOV2 (404-546))
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V0U PDB ENTRY 2V0U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.15 42.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.706 α = 90 b = 57.155 β = 90 c = 67.395 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD MARRESEARCH BENT CONICAL SI-MIRROR (RH COATED) M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 97 0.043 30 3.4 57554
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 99 0.21 5.4 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2V0U 1.65 15.83 15778 843 97 0.158 0.156 0.1681 0.195 0.207 RANDOM 17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.01 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.999 r_dihedral_angle_3_deg 12.657 r_dihedral_angle_4_deg 12.249 r_dihedral_angle_1_deg 5.564 r_scangle_it 3.541 r_scbond_it 2.46 r_angle_refined_deg 1.25 r_mcangle_it 1.131 r_mcbond_it 1.111 r_angle_other_deg 0.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.999 r_dihedral_angle_3_deg 12.657 r_dihedral_angle_4_deg 12.249 r_dihedral_angle_1_deg 5.564 r_scangle_it 3.541 r_scbond_it 2.46 r_angle_refined_deg 1.25 r_mcangle_it 1.131 r_mcbond_it 1.111 r_angle_other_deg 0.867 r_symmetry_vdw_other 0.299 r_symmetry_vdw_refined 0.263 r_nbd_refined 0.21 r_nbd_other 0.193 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.142 r_symmetry_hbond_refined 0.129 r_nbtor_other 0.082 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1173 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing