☰ Navigation Tabs
Crystal structure of the F96W mutant of Plasmodium falciparum triosephosphate isomerase complexed with 3-phosphoglycerate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O5X PDB ENTRY 1O5X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 0.1 M SODIUM ACETATE, PH 4.0-5.5, PEG 1450 8-24%
Crystal Properties Matthews coefficient Solvent content 2.1 43.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.543 α = 90 b = 51.182 β = 92.4 c = 86.568 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRROR 2007-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.6 0.08 13.5 3 31777
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 98.7 0.42 2.4 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1O5X 2 44.07 30156 1604 99.51 0.19604 0.19339 0.2448 0.2302 RANDOM 24.718
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.911 r_dihedral_angle_3_deg 14.609 r_dihedral_angle_4_deg 12.422 r_dihedral_angle_1_deg 5.642 r_scangle_it 1.743 r_angle_refined_deg 1.092 r_scbond_it 1.085 r_mcangle_it 0.712 r_mcbond_it 0.398 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.911 r_dihedral_angle_3_deg 14.609 r_dihedral_angle_4_deg 12.422 r_dihedral_angle_1_deg 5.642 r_scangle_it 1.743 r_angle_refined_deg 1.092 r_scbond_it 1.085 r_mcangle_it 0.712 r_mcbond_it 0.398 r_nbtor_refined 0.296 r_nbd_refined 0.181 r_symmetry_vdw_refined 0.179 r_symmetry_hbond_refined 0.169 r_xyhbond_nbd_refined 0.115 r_chiral_restr 0.076 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3925 Nucleic Acid Atoms Solvent Atoms 440 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing