X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1J9YPDB ENTRY 1J9Y

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.9937.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.273α = 90
b = 83.606β = 90
c = 84.337γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7201000.0819.47414642
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.761000.493.77

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1J9Y1.719.6239275207899.840.150140.148090.18814RANDOM9.996
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.12-0.05-0.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.543
r_dihedral_angle_4_deg12.7
r_dihedral_angle_3_deg10.647
r_dihedral_angle_1_deg5.978
r_scangle_it2.713
r_scbond_it1.867
r_angle_refined_deg1.231
r_mcangle_it1.181
r_angle_other_deg1.104
r_mcbond_it0.759
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.543
r_dihedral_angle_4_deg12.7
r_dihedral_angle_3_deg10.647
r_dihedral_angle_1_deg5.978
r_scangle_it2.713
r_scbond_it1.867
r_angle_refined_deg1.231
r_mcangle_it1.181
r_angle_other_deg1.104
r_mcbond_it0.759
r_chiral_restr0.075
r_bond_refined_d0.01
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2931
Nucleic Acid Atoms
Solvent Atoms364
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
MOLREPphasing