2WFI

Atomic resolution crystal structure of the PPIase domain of human cyclophilin G


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.528-32% PEG 4000 (W/V), 0.2M MGCL2, 0.1M TRIS PH 8.5
Crystal Properties
Matthews coefficientSolvent content
1.9336.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.544α = 90
b = 65.144β = 90
c = 69.68γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHCOLLIMATORMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMPG/DESY, HAMBURG BEAMLINE BW6MPG/DESY, HAMBURGBW6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
10.752093.50.0617.47.152061942
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
10.750.7679.10.521.68

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONDIRECT METHODSFREE R-VALUENONE0.75101943001023989.10.1070.1070.124RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
301274.411695.52
RMS Deviations
KeyRefinement Restraint Deviation
s_non_zero_chiral_vol0.173
s_approx_iso_adps0.114
s_zero_chiral_vol0.099
s_anti_bump_dis_restr0.092
s_similar_adp_cmpnt0.05
s_angle_d0.039
s_from_restr_planes0.031
s_bond_d0.02
s_rigid_bond_adp_cmpnt0.006
s_similar_dist
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1350
Nucleic Acid Atoms
Solvent Atoms432
Heterogen Atoms2

Software

Software
Software NamePurpose
SHELXL-97refinement
DENZOdata reduction
SCALEPACKdata scaling
SHELXphasing