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CATHEPSIN L WITH A NITRILE INHIBITOR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M BIS-TRIS 6.5, 20% PEG MME 5000
Crystal Properties Matthews coefficient Solvent content 2.06 40.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.992 α = 90 b = 57.153 β = 90 c = 76.589 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 50 96.3 0.08 12.36 6.44 43529 -3 20.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.44 93.5 0.72 1.5 6.16
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.35 39.43 39386 2097 91.98 0.15285 0.15033 0.157 0.20091 0.2105 RANDOM 20.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 -1.1 2.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.86 r_sphericity_free 30.047 r_dihedral_angle_4_deg 15.807 r_sphericity_bonded 13.521 r_dihedral_angle_3_deg 12.761 r_dihedral_angle_1_deg 5.654 r_rigid_bond_restr 2.016 r_angle_refined_deg 1.291 r_angle_other_deg 0.873 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.86 r_sphericity_free 30.047 r_dihedral_angle_4_deg 15.807 r_sphericity_bonded 13.521 r_dihedral_angle_3_deg 12.761 r_dihedral_angle_1_deg 5.654 r_rigid_bond_restr 2.016 r_angle_refined_deg 1.291 r_angle_other_deg 0.873 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1669 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement XDS data reduction SADABS data scaling REFMAC phasing