☰ Navigation Tabs
Crystal Structure of p63RhoGEF complex with Galpha-q and RhoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BCJ 2bcj (Galpha-Q), 1lb1 (RhoA; Dbs for p63) experimental model PDB 1LB1 2bcj (Galpha-Q), 1lb1 (RhoA; Dbs for p63)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 100 mM HEPES pH 6.5, 14.5% PEG 3350, 400 mM KCl. Drops were microseeded to obtain large crystals, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.98 58.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.187 α = 80.87 b = 68.056 β = 85.16 c = 138.018 γ = 87.09
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 225 mm CCD 2007-04-13 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.9993 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 30 97.1 0.087 0.087 5.7 2.5 30174 29299 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.62 98.1 0.531 0.53 1.67 2.4 2976
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2bcj (Galpha-Q), 1lb1 (RhoA; Dbs for p63) 3.5 20 30159 29080 96.42 0.243 0.2333 0.299 124.405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.23 -5.61 -1.73 -3.53 4.84 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.407 r_dihedral_angle_3_deg 18.52 r_dihedral_angle_4_deg 15.872 r_dihedral_angle_1_deg 6.114 r_scangle_it 1.458 r_angle_refined_deg 1.139 r_scbond_it 0.949 r_angle_other_deg 0.838 r_mcangle_it 0.817 r_mcbond_it 0.591
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.407 r_dihedral_angle_3_deg 18.52 r_dihedral_angle_4_deg 15.872 r_dihedral_angle_1_deg 6.114 r_scangle_it 1.458 r_angle_refined_deg 1.139 r_scbond_it 0.949 r_angle_other_deg 0.838 r_mcangle_it 0.817 r_mcbond_it 0.591 r_nbd_refined 0.212 r_nbtor_refined 0.183 r_nbd_other 0.178 r_symmetry_vdw_other 0.175 r_xyhbond_nbd_refined 0.147 r_symmetry_vdw_refined 0.137 r_mcbond_other 0.107 r_nbtor_other 0.084 r_chiral_restr 0.064 r_xyhbond_nbd_other 0.036 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13455 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 68
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection