X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1OUU 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82980.1 M Tris at pH 8.0 and 16.5% polyethylene glycol 4K, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.3547.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.73α = 90
b = 84.897β = 90
c = 121.475γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93CCDMAR CCD 130 mmMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.979APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.97032953

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1OUU2.169.532953173897.380.206660.204160.25205RANDOM29.763
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.87-1.01-0.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.42
r_dihedral_angle_3_deg16.416
r_dihedral_angle_4_deg13.791
r_dihedral_angle_1_deg5.306
r_scangle_it2.599
r_scbond_it1.771
r_angle_refined_deg1.347
r_mcangle_it1.004
r_mcbond_it0.612
r_nbtor_refined0.299
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.42
r_dihedral_angle_3_deg16.416
r_dihedral_angle_4_deg13.791
r_dihedral_angle_1_deg5.306
r_scangle_it2.599
r_scbond_it1.771
r_angle_refined_deg1.347
r_mcangle_it1.004
r_mcbond_it0.612
r_nbtor_refined0.299
r_symmetry_vdw_refined0.255
r_symmetry_hbond_refined0.238
r_nbd_refined0.218
r_xyhbond_nbd_refined0.162
r_chiral_restr0.089
r_metal_ion_refined0.075
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4458
Nucleic Acid Atoms
Solvent Atoms152
Heterogen Atoms178

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing