X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6281precipitant: PEG200, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 281K
Crystal Properties
Matthews coefficientSolvent content
3.261.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 176.516α = 90
b = 176.516β = 90
c = 86.862γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDSi(111) Double Crystal Monochrometer. Adjustable focusing mirrors in K-B geometry2008-11-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D1.03324APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.145099.50.11614.26.38350983509-332
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.142.2298.30.7342.165.78375

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.1448.222.168055980559429999.410.18160.179720.21635RANDOM29.909
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.760.881.76-2.64
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.081
r_dihedral_angle_4_deg15.434
r_dihedral_angle_3_deg13.468
r_dihedral_angle_1_deg6.918
r_scangle_it2.529
r_scbond_it1.871
r_angle_refined_deg1.404
r_mcangle_it1.169
r_mcbond_it0.978
r_angle_other_deg0.878
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.081
r_dihedral_angle_4_deg15.434
r_dihedral_angle_3_deg13.468
r_dihedral_angle_1_deg6.918
r_scangle_it2.529
r_scbond_it1.871
r_angle_refined_deg1.404
r_mcangle_it1.169
r_mcbond_it0.978
r_angle_other_deg0.878
r_symmetry_vdw_other0.264
r_nbd_refined0.195
r_nbd_other0.191
r_nbtor_refined0.182
r_mcbond_other0.175
r_symmetry_hbond_refined0.155
r_xyhbond_nbd_refined0.139
r_symmetry_vdw_refined0.137
r_chiral_restr0.091
r_nbtor_other0.085
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8301
Nucleic Acid Atoms
Solvent Atoms274
Heterogen Atoms28

Software

Software
Software NamePurpose
HKL-2000data collection
SHELXSphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling