3GOL

HCV NS5b polymerase in complex with 1,5 benzodiazepine inhibitor (R)-11d

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.75	293	5-8% PEG 6000, 100mM Mg-Salts, pH 6.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
2.94	58.12

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 106.048	α = 90
b = 106.62	β = 90
c = 134.679	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 225 mm CCD		2006-01-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X10SA	0.97630	SLS	X10SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.85	41.81	99.6	0.162	10.5	4.1	36205	36205

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.85	2.95	99.5		0.501	3.3	4.2	3510

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.85	41.81	34394	34394	1811	99.64	0.19133	0.19133	0.1883	0.2503	RANDOM	33.615

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
3.61			-0.56		-3.05

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.591
r_dihedral_angle_3_deg	19.038
r_dihedral_angle_4_deg	17.803
r_dihedral_angle_1_deg	6.608
r_scangle_it	6.16
r_scbond_it	4.111
r_mcangle_it	2.708
r_mcbond_it	2.003
r_angle_refined_deg	1.341
r_angle_other_deg	0.785
r_mcbond_other	0.372
r_nbd_refined	0.22
r_symmetry_vdw_other	0.201
r_nbtor_refined	0.184
r_nbd_other	0.182
r_symmetry_vdw_refined	0.167
r_xyhbond_nbd_refined	0.162
r_symmetry_hbond_refined	0.145
r_nbtor_other	0.088
r_metal_ion_refined	0.079
r_chiral_restr	0.071
r_xyhbond_nbd_other	0.021
r_bond_refined_d	0.011
r_gen_planes_refined	0.004
r_gen_planes_other	0.003
r_bond_other_d	0.001
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8695
Nucleic Acid Atoms
Solvent Atoms	112
Heterogen Atoms	62

Software

Software
Software Name	Purpose
XDS	data scaling
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling