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Human poly(ADP-ribose) polymerase 10, catalytic fragment in complex with an inhibitor 3-aminobenzamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BLJ PDB ENTRY 3BLJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.49M NaH2PO4, 0.9M K2HPO4, pH7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.93 58.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.38 α = 90 b = 97.38 β = 90 c = 121.16 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Rh-coated Si mirrors 2009-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 0.97900 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 99.6 0.093 0.089 15.3 7.8 34589 34589
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.15 99.4 0.722 0.428 4 8 2499
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3BLJ 2.1 29.84 32856 32856 1730 100 0.19801 0.19801 0.19574 0.24196 0.2465 RANDOM 30.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 1.05 -2.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.76 r_dihedral_angle_4_deg 19.866 r_dihedral_angle_3_deg 16.172 r_dihedral_angle_1_deg 5.882 r_scangle_it 4.628 r_scbond_it 2.691 r_mcangle_it 1.883 r_angle_refined_deg 1.506 r_mcbond_it 0.986 r_angle_other_deg 0.917
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.76 r_dihedral_angle_4_deg 19.866 r_dihedral_angle_3_deg 16.172 r_dihedral_angle_1_deg 5.882 r_scangle_it 4.628 r_scbond_it 2.691 r_mcangle_it 1.883 r_angle_refined_deg 1.506 r_mcbond_it 0.986 r_angle_other_deg 0.917 r_mcbond_other 0.214 r_chiral_restr 0.097 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3086 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 37
Software Software Software Name Purpose MxCuBE data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling