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Crystal structure of a bol-like protein from babesia bovis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other iodide SAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 290 EBS JCSG SCREEN E2: 2M AMMONIUM SULPHATE, 100MM CACODYLATE PH 6.5, 200MM NACL: BABOA.10365.A AT 12.4MG/ML, ENCUA.00735 AT 29.3MG/ML, PH N/A, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K
Crystal Properties Matthews coefficient Solvent content 1.64 25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.3 α = 90 b = 66.3 β = 90 c = 35.29 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 Rigaku/Osmic VariMax HF 2009-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 20 99.7 0.094 19.39 18.3 6133 -3 25.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 99.6 0.481 4.4 7 795
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT iodide SAD 1.95 19.53 6045 6045 276 99.2 0.185 0.185 0.183 0.1877 0.241 0.2446 RANDOM 15.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.19 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.366 r_dihedral_angle_4_deg 21.6 r_dihedral_angle_3_deg 14.412 r_dihedral_angle_1_deg 5.958 r_scangle_it 4.795 r_scbond_it 2.874 r_angle_refined_deg 1.712 r_mcangle_it 1.41 r_angle_other_deg 0.965 r_mcbond_it 0.761
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.366 r_dihedral_angle_4_deg 21.6 r_dihedral_angle_3_deg 14.412 r_dihedral_angle_1_deg 5.958 r_scangle_it 4.795 r_scbond_it 2.874 r_angle_refined_deg 1.712 r_mcangle_it 1.41 r_angle_other_deg 0.965 r_mcbond_it 0.761 r_mcbond_other 0.215 r_chiral_restr 0.091 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 634 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 10
Software Software Software Name Purpose StructureStudio data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling