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Mineralocorticoid receptor ligand-binding domain with spironolactone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AB2 PDB ENTRY 2AB2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.1M HEPES pH 7.0, 1.26M Lithium sulfate, 6% PEG MME 2000, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.44 49.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.526 α = 90 b = 171.509 β = 90 c = 42.358 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2005-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.000 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.11 50 98.6 0.059 26.2 6 19366 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.2 90.3 0.515 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2AB2 2.11 40 18299 987 97.76 0.19315 0.19034 0.1892 0.24571 0.2395 RANDOM 52.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.62 -2.96 -1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.681 r_dihedral_angle_4_deg 15.993 r_dihedral_angle_3_deg 15.268 r_scangle_it 7.682 r_scbond_it 5.262 r_dihedral_angle_1_deg 4.835 r_mcangle_it 3.185 r_mcbond_it 1.923 r_angle_refined_deg 1.207 r_chiral_restr 0.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.681 r_dihedral_angle_4_deg 15.993 r_dihedral_angle_3_deg 15.268 r_scangle_it 7.682 r_scbond_it 5.262 r_dihedral_angle_1_deg 4.835 r_mcangle_it 3.185 r_mcbond_it 1.923 r_angle_refined_deg 1.207 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2034 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 29
Software Software Software Name Purpose MOLREP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling