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Structural insights into cofactor and substrate selection by Gox0499
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 293 PEG 500, CaCl2, Bis-Tris, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.24 45.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.523 α = 90 b = 254.602 β = 90 c = 76.778 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-02-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9791, 0.9793, 0.96 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 100 0.097 6.6 77510 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 48.49 77510 4086 99.83 0.18943 0.18655 0.187 0.2441 0.2444 RANDOM 30.863
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.36 -0.04 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.884 r_dihedral_angle_4_deg 22.156 r_dihedral_angle_3_deg 16.134 r_dihedral_angle_1_deg 6.234 r_scangle_it 3.113 r_scbond_it 2.084 r_angle_refined_deg 1.319 r_mcangle_it 1.182 r_mcbond_it 0.842 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.884 r_dihedral_angle_4_deg 22.156 r_dihedral_angle_3_deg 16.134 r_dihedral_angle_1_deg 6.234 r_scangle_it 3.113 r_scbond_it 2.084 r_angle_refined_deg 1.319 r_mcangle_it 1.182 r_mcbond_it 0.842 r_nbtor_refined 0.3 r_symmetry_hbond_refined 0.228 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13992 Nucleic Acid Atoms Solvent Atoms 567 Heterogen Atoms 112
Software Software Software Name Purpose HKL-2000 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling