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Complex of HSP90 ATPase domain with tropane derived inhibitors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other IN-HOUSE APO STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 pH 8
Crystal Properties Matthews coefficient Solvent content 2.54 51.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.307 α = 70.48 b = 56.904 β = 87.2 c = 57.457 γ = 69.02
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93.2 CCD MARRESEARCH 2006-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 44.98 78.7 0.18 8.36 1.95 39846 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.86 27.5 0.75 1.14 1.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IN-HOUSE APO STRUCTURE 1.82 53.99 37837 2009 90.29 0.20719 0.20511 0.2025 0.24561 0.2418 RANDOM 24.846
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01 0.78 0.07 -0.25 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.416 r_dihedral_angle_4_deg 20.187 r_dihedral_angle_3_deg 14.779 r_dihedral_angle_1_deg 6.296 r_scangle_it 3.792 r_scbond_it 2.524 r_mcangle_it 1.682 r_angle_refined_deg 1.672 r_mcbond_it 1.071 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.416 r_dihedral_angle_4_deg 20.187 r_dihedral_angle_3_deg 14.779 r_dihedral_angle_1_deg 6.296 r_scangle_it 3.792 r_scbond_it 2.524 r_mcangle_it 1.682 r_angle_refined_deg 1.672 r_mcbond_it 1.071 r_nbtor_refined 0.3 r_nbtor_other 0.3 r_chiral_restr 0.211 r_nbd_refined 0.208 r_nbd_other 0.208 r_symmetry_vdw_refined 0.189 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.151 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3224 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing