X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HP4PDB ENTRY 1HP4

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
10.1 M HEPES PH 7.3, 8 % (W/V) PEG 6000
Crystal Properties
Matthews coefficientSolvent content
3.262

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.66α = 90
b = 128.9β = 90
c = 150.32γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120CCDADSC CCD2011-07-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I03DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8552.2499.90.0616.86.11207862
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.9599.90.563.36.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HP41.8597.85114637606799.830.164650.162630.20231RANDOM27.902
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.240.45-0.69
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.703
r_dihedral_angle_4_deg16.765
r_dihedral_angle_3_deg12.841
r_dihedral_angle_1_deg6.648
r_long_range_B_refined6.179
r_long_range_B_other6.067
r_scangle_other4.392
r_scbond_it3.081
r_mcangle_other3.08
r_mcangle_it3.079
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.703
r_dihedral_angle_4_deg16.765
r_dihedral_angle_3_deg12.841
r_dihedral_angle_1_deg6.648
r_long_range_B_refined6.179
r_long_range_B_other6.067
r_scangle_other4.392
r_scbond_it3.081
r_mcangle_other3.08
r_mcangle_it3.079
r_scbond_other3.073
r_mcbond_it2.447
r_mcbond_other2.446
r_angle_refined_deg1.888
r_angle_other_deg0.942
r_chiral_restr0.129
r_bond_refined_d0.02
r_gen_planes_refined0.011
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7659
Nucleic Acid Atoms
Solvent Atoms895
Heterogen Atoms88

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing