4LOH

Crystal structure of hSTING(H232) in complex with c[G(2',5')pA(3',5')p]


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52930.01 M NiCl2, 0.1 M Tris, 20% PEG2000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.9458.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.5α = 83.98
b = 59.209β = 85.83
c = 59.205γ = 85.87
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200CCDADSC QUANTUM 315r2013-04-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A1.075NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.255097.55219872144822
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.3397.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2531.8722198721448116297.50.1880.1860.215RANDOM34.78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.15-0.09-0.130.080.330.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.364
r_dihedral_angle_4_deg17.69
r_dihedral_angle_3_deg17.512
r_long_range_B_other10.665
r_long_range_B_refined10.657
r_scangle_other7.684
r_dihedral_angle_1_deg6.829
r_mcangle_other6.503
r_mcangle_it6.5
r_scbond_it4.896
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.364
r_dihedral_angle_4_deg17.69
r_dihedral_angle_3_deg17.512
r_long_range_B_other10.665
r_long_range_B_refined10.657
r_scangle_other7.684
r_dihedral_angle_1_deg6.829
r_mcangle_other6.503
r_mcangle_it6.5
r_scbond_it4.896
r_scbond_other4.894
r_mcbond_it4.213
r_mcbond_other4.197
r_angle_refined_deg1.968
r_angle_other_deg0.973
r_chiral_restr0.142
r_bond_refined_d0.022
r_gen_planes_refined0.01
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2958
Nucleic Acid Atoms
Solvent Atoms125
Heterogen Atoms45

Software

Software
Software NamePurpose
CBASSdata collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling