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Crystal Structure of PDE10A with Novel Keto-Benzimidazole Inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 1.6M Ammonium Sulfate, 0.1M MES monohydrate, 10% v/v 1,4-Dioxane, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.11 70.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 252.062 α = 90 b = 252.062 β = 90 c = 252.062 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Osmics VariMax HR 2008-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.496 50 98.4 46010 45251
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.496 2.59 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.496 24.38 43272 43272 2293 99.03 0.16267 0.16267 0.16164 0.18159 0.1925 RANDOM 45.604
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.655 r_dihedral_angle_4_deg 15.116 r_dihedral_angle_3_deg 13.38 r_dihedral_angle_1_deg 4.681 r_long_range_B_refined 4.336 r_long_range_B_other 4.281 r_mcangle_it 1.675 r_mcangle_other 1.675 r_scangle_other 1.565 r_mcbond_it 0.967
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.655 r_dihedral_angle_4_deg 15.116 r_dihedral_angle_3_deg 13.38 r_dihedral_angle_1_deg 4.681 r_long_range_B_refined 4.336 r_long_range_B_other 4.281 r_mcangle_it 1.675 r_mcangle_other 1.675 r_scangle_other 1.565 r_mcbond_it 0.967 r_mcbond_other 0.966 r_scbond_it 0.931 r_scbond_other 0.909 r_angle_refined_deg 0.883 r_angle_other_deg 0.713 r_chiral_restr 0.049 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4987 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 124
Software Software Software Name Purpose StructureStudio data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling