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Dialyzed HEW lysozyme batch crystallized in 1.0 M RbCl and collected at 100 K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 193L PDB ENTRY 193L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 293 Dialyzed lysozyme, no buffer added, 1.0 M RbCl, pH 4.5, Batch crystallization, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.03 39.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.024 α = 90 b = 79.024 β = 90 c = 37.216 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2013-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 39.512 99 0.039 16.5 4.4 90624 11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.17 98.3 0.299 3.2 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 193L 1.1 39.512 75345 43312 4669 99.17 0.14566 0.14268 0.1489 0.17327 0.1743 RANDOM 15.094
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -0.27 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.006 r_sphericity_free 28.554 r_dihedral_angle_4_deg 19.253 r_dihedral_angle_3_deg 12.404 r_sphericity_bonded 8.874 r_dihedral_angle_1_deg 5.922 r_rigid_bond_restr 3.46 r_scbond_it 1.833 r_angle_refined_deg 1.68 r_mcangle_it 1.654
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.006 r_sphericity_free 28.554 r_dihedral_angle_4_deg 19.253 r_dihedral_angle_3_deg 12.404 r_sphericity_bonded 8.874 r_dihedral_angle_1_deg 5.922 r_rigid_bond_restr 3.46 r_scbond_it 1.833 r_angle_refined_deg 1.68 r_mcangle_it 1.654 r_mcbond_it 1.371 r_mcbond_other 1.367 r_angle_other_deg 0.926 r_chiral_restr 0.107 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement PHASER phasing CNS refinement XDS data reduction XDS data scaling TRUNCATE data scaling MxCuBE data collection