4RH7

Crystal structure of human cytoplasmic dynein 2 motor domain in complex with ADP.Vi

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		292	mixing equal volumes of protein (8mg/ml) and reservoir solution (4-6 % PEG 6000 and 0.1 M Tris pH 8.0), VAPOR DIFFUSION, HANGING DROP, temperature 292K

Crystal Properties
Matthews coefficient	Solvent content
5.83	78.89

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 136.03	α = 90
b = 487.15	β = 90
c = 276.46	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	PSI PILATUS 6M		2014-02-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I02		Diamond	I02

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.4	56.5	62.2	0.101	7.6	4.1		78411

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MIRAS	THROUGHOUT	3.41	56.6	74060	3915	62.16	0.23989	0.23746	0.28546	RANDOM	114.274

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.05			-0.28		0.23

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.234
r_long_range_B_refined	25.39
r_long_range_B_other	25.39
r_dihedral_angle_3_deg	17.385
r_dihedral_angle_4_deg	15.7
r_scangle_other	14.656
r_mcangle_it	13.706
r_mcangle_other	13.677
r_scbond_it	8.508
r_scbond_other	8.493
r_mcbond_it	8.241
r_mcbond_other	8.241
r_dihedral_angle_1_deg	7.269
r_angle_refined_deg	1.548
r_angle_other_deg	0.846
r_chiral_restr	0.073
r_bond_refined_d	0.012
r_bond_other_d	0.006
r_gen_planes_refined	0.005
r_gen_planes_other	0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	22697
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	119

Software

Software
Software Name	Purpose
SHARP	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling