Experiment: 4U89

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	4	285	22% PEG 1000, 0.2 M LiSO4, 0.1 M phosphate-citrate pH 4.0

Crystal Properties
Matthews coefficient	Solvent content
2.67	53.9

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 99.808	α = 90
b = 121.263	β = 90
c = 48.828	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2012-04-09	M	SINGLE WAVELENGTH
2	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M			M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SOLEIL BEAMLINE PROXIMA 1	0.98011	SOLEIL	PROXIMA 1
2	SYNCHROTRON	ESRF BEAMLINE ID29	2.06640	ESRF	ID29

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	30.316	99.7	0.069	0.074	15.12	6.98		58569		-3	21.864

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.48	98.5		0.514	0.57	2.73

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	1.4	30.32	58563	2964	99.72	0.1398	0.1384	0.1663	RANDOM	20.226

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
			0.02		-0.02

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	38.913
r_dihedral_angle_2_deg	30.36
r_dihedral_angle_4_deg	19.413
r_sphericity_bonded	17.021
r_dihedral_angle_3_deg	13.052
r_rigid_bond_restr	8.273
r_dihedral_angle_1_deg	6.102
r_angle_refined_deg	2.415
r_chiral_restr	0.158
r_bond_refined_d	0.025

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	38.913
r_dihedral_angle_2_deg	30.36
r_dihedral_angle_4_deg	19.413
r_sphericity_bonded	17.021
r_dihedral_angle_3_deg	13.052
r_rigid_bond_restr	8.273
r_dihedral_angle_1_deg	6.102
r_angle_refined_deg	2.415
r_chiral_restr	0.158
r_bond_refined_d	0.025
r_gen_planes_refined	0.016

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1713
Nucleic Acid Atoms
Solvent Atoms	271
Heterogen Atoms	82

Software

Software
Software Name	Purpose
XDS	data reduction
SHELX	phasing
PDB_EXTRACT	data extraction
Coot	model building
REFMAC	refinement
XSCALE	data scaling
SHELXD	phasing
XSCALE	data reduction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.