☰ Navigation Tabs
Crystal structure of XEG5B, a GH5 xyloglucan-specific beta-1,4-glucanase from ruminal metagenomic library, in complex with XXLG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 291 ammonium sulfate, sodium citrate, glycerol
Crystal Properties Matthews coefficient Solvent content 2.9 57.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.632 α = 90 b = 120.632 β = 90 c = 59.004 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 0.954 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 50 95.7 0.053 0.056 26.38 8.3 165780 -3 11.637
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.22 85.9 0.294
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.15 39.49 157480 8301 95.71 0.1041 0.1031 0.1058 0.1224 0.1228 RANDOM 9.959
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.28 -1.28 2.56
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 45.427 r_dihedral_angle_2_deg 37.677 r_dihedral_angle_4_deg 18.619 r_sphericity_bonded 13.746 r_dihedral_angle_3_deg 11.349 r_rigid_bond_restr 7.752 r_dihedral_angle_1_deg 6.535 r_angle_refined_deg 2.192 r_mcangle_it 1.6 r_angle_other_deg 1.541
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 45.427 r_dihedral_angle_2_deg 37.677 r_dihedral_angle_4_deg 18.619 r_sphericity_bonded 13.746 r_dihedral_angle_3_deg 11.349 r_rigid_bond_restr 7.752 r_dihedral_angle_1_deg 6.535 r_angle_refined_deg 2.192 r_mcangle_it 1.6 r_angle_other_deg 1.541 r_mcbond_it 1.277 r_mcbond_other 1.274 r_chiral_restr 0.166 r_bond_refined_d 0.025 r_gen_planes_refined 0.012 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3012 Nucleic Acid Atoms Solvent Atoms 678 Heterogen Atoms 164
Software Software Software Name Purpose XDS data scaling REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling