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High pressure protein crystallography of hen egg white lysozyme at 380 MPa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 Sodium chloride
Crystal Properties Matthews coefficient Solvent content 1.99 38.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.51 α = 90 b = 77.51 β = 90 c = 37.967 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 210r 2013-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.71 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 50 92.7 50.3 7.6 15293
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.62 27.42 13435 716 92.7 0.15646 0.15454 0.1651 0.19376 0.2017 RANDOM 20.566
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.06 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.371 r_dihedral_angle_4_deg 20.07 r_dihedral_angle_3_deg 13.817 r_long_range_B_refined 7.731 r_long_range_B_other 7.676 r_dihedral_angle_1_deg 6.462 r_scangle_other 5.585 r_scbond_it 3.671 r_scbond_other 3.668 r_mcangle_it 2.726
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.371 r_dihedral_angle_4_deg 20.07 r_dihedral_angle_3_deg 13.817 r_long_range_B_refined 7.731 r_long_range_B_other 7.676 r_dihedral_angle_1_deg 6.462 r_scangle_other 5.585 r_scbond_it 3.671 r_scbond_other 3.668 r_mcangle_it 2.726 r_mcangle_other 2.726 r_angle_refined_deg 2.099 r_mcbond_other 1.843 r_mcbond_it 1.842 r_angle_other_deg 1.017 r_chiral_restr 0.15 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement