☰ Navigation Tabs
Crystal structure of Leptospira Interrogans Triosephosphate Isomerase (LiTIM)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 PEG6000, calcium chloride, EDTA, HEPES buffer, Sodium azide
Crystal Properties Matthews coefficient Solvent content 3.71 66.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.02 α = 90 b = 103.02 β = 90 c = 66.13 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 1 2014-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.54180
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.084 44.61 95.9 25.9 8.9 23354
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 6.59 97 0.22 8.9 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.084 44.61 22141 1194 95.14 0.1565 0.15462 0.1685 0.19101 0.2003 RANDOM 22.395
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.377 r_dihedral_angle_4_deg 21.348 r_dihedral_angle_3_deg 13.324 r_dihedral_angle_1_deg 6.436 r_long_range_B_refined 6.029 r_long_range_B_other 5.708 r_scangle_other 4.283 r_scbond_it 2.893 r_scbond_other 2.891 r_mcangle_other 2.827
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.377 r_dihedral_angle_4_deg 21.348 r_dihedral_angle_3_deg 13.324 r_dihedral_angle_1_deg 6.436 r_long_range_B_refined 6.029 r_long_range_B_other 5.708 r_scangle_other 4.283 r_scbond_it 2.893 r_scbond_other 2.891 r_mcangle_other 2.827 r_mcangle_it 2.825 r_mcbond_it 1.999 r_mcbond_other 1.985 r_angle_refined_deg 1.892 r_angle_other_deg 0.916 r_chiral_restr 0.116 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1871 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing