☰ Navigation Tabs
F96S/S73A Double mutant of Plasmodium Falciparum Triosephosphate Isomerase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VFD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 NaOAc, 10mM Li2SO4, 0.5mM DTT, 0.5mM NaN3, 0.5mM EDTA, 28% PEG 1450
Crystal Properties Matthews coefficient Solvent content 2.17 43.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.48 α = 90 b = 50.84 β = 91.74 c = 88.26 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2009-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 53.45 98.9 7 3.3 29180
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.07 2.2 93 0.36 2.8 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2VFD 2.07 53.45 27919 1471 93.96 0.21873 0.2165 0.2211 0.26011 0.2633 RANDOM 9.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.413 r_dihedral_angle_3_deg 12.288 r_dihedral_angle_4_deg 10.964 r_dihedral_angle_1_deg 5.97 r_long_range_B_refined 2.055 r_long_range_B_other 2.055 r_angle_refined_deg 1.078 r_angle_other_deg 0.737 r_mcangle_it 0.507 r_mcangle_other 0.507
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.413 r_dihedral_angle_3_deg 12.288 r_dihedral_angle_4_deg 10.964 r_dihedral_angle_1_deg 5.97 r_long_range_B_refined 2.055 r_long_range_B_other 2.055 r_angle_refined_deg 1.078 r_angle_other_deg 0.737 r_mcangle_it 0.507 r_mcangle_other 0.507 r_scangle_other 0.4 r_mcbond_it 0.281 r_mcbond_other 0.281 r_scbond_other 0.235 r_scbond_it 0.234 r_chiral_restr 0.062 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3840 Nucleic Acid Atoms Solvent Atoms 301 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing