X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3UTP3UTP and 3UTQ
experimental modelPDB 3UTQ3UTP and 3UTQ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2910.2M sodium cholride, 0.1M MES pH6, 20% PEG 6000
Crystal Properties
Matthews coefficientSolvent content
2.7555.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.8α = 96.33
b = 99.26β = 98.07
c = 122.15γ = 96.42
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152011-01-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.9795DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.33248.91397.40.0410.0750.0512.72.28331583315
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.332.3996.50.2910.2910.4182.62.26097

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3UTP and 3UTQ2.33248.9179156415997.360.20950.20610.2718RANDOM55.312
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.030.19-0.190.241.68-2.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.399
r_dihedral_angle_4_deg23.173
r_dihedral_angle_3_deg22.659
r_dihedral_angle_1_deg8.031
r_mcangle_it2.119
r_scbond_it1.981
r_angle_refined_deg1.908
r_mcbond_it1.29
r_chiral_restr0.146
r_bond_refined_d0.015
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.399
r_dihedral_angle_4_deg23.173
r_dihedral_angle_3_deg22.659
r_dihedral_angle_1_deg8.031
r_mcangle_it2.119
r_scbond_it1.981
r_angle_refined_deg1.908
r_mcbond_it1.29
r_chiral_restr0.146
r_bond_refined_d0.015
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13254
Nucleic Acid Atoms
Solvent Atoms220
Heterogen Atoms153

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction