5LSA

human catechol O-methyltransferase in complex with SAM and DNC at 1.50A


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
otherinhouse model

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP9295AMMONIUM SULPHATE, CHES, PH 9
Crystal Properties
Matthews coefficientSolvent content
2.1242.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.021α = 90
b = 61.311β = 118.3
c = 44.773γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2009-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.999900SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.537.8897.60.0920.1090.9978.533.4732181-321.029
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5480.30.6740.8630.5971.26

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTinhouse model1.537.8828358151290.30.16940.16730.2096RANDOM12.995
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.470.88-0.041.35
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.936
r_dihedral_angle_4_deg19.715
r_dihedral_angle_3_deg13.254
r_dihedral_angle_1_deg5.564
r_scangle_it4.263
r_scbond_it2.683
r_mcangle_it1.681
r_angle_refined_deg1.653
r_angle_other_deg0.99
r_mcbond_it0.984
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.936
r_dihedral_angle_4_deg19.715
r_dihedral_angle_3_deg13.254
r_dihedral_angle_1_deg5.564
r_scangle_it4.263
r_scbond_it2.683
r_mcangle_it1.681
r_angle_refined_deg1.653
r_angle_other_deg0.99
r_mcbond_it0.984
r_mcbond_other0.307
r_chiral_restr0.103
r_bond_refined_d0.018
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1670
Nucleic Acid Atoms
Solvent Atoms250
Heterogen Atoms43

Software

Software
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing