X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52981M trisodium cacodylate, 0.1M sodium cacodylate , pH 6.5
Crystal Properties
Matthews coefficientSolvent content
2.550.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106α = 90
b = 106β = 90
c = 92.58γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300HE2011-11-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08B1-1CLSI08B1-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.942.1996.199999940390-3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFREE R-VALUE1.942.1938308203095.790.1570.15470.20008copied from 4eyl20.141
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.050.05-0.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.478
r_dihedral_angle_4_deg19.595
r_dihedral_angle_3_deg13.398
r_long_range_B_refined6.692
r_long_range_B_other6.692
r_dihedral_angle_1_deg6.416
r_angle_other_deg4.256
r_scangle_other4.087
r_mcangle_it2.809
r_mcangle_other2.809
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.478
r_dihedral_angle_4_deg19.595
r_dihedral_angle_3_deg13.398
r_long_range_B_refined6.692
r_long_range_B_other6.692
r_dihedral_angle_1_deg6.416
r_angle_other_deg4.256
r_scangle_other4.087
r_mcangle_it2.809
r_mcangle_other2.809
r_scbond_it2.639
r_scbond_other2.638
r_mcbond_it1.812
r_mcbond_other1.803
r_angle_refined_deg1.797
r_chiral_restr0.109
r_gen_planes_other0.054
r_bond_refined_d0.044
r_gen_planes_refined0.014
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3510
Nucleic Acid Atoms
Solvent Atoms398
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement