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Super-Folder Green Fluorescent Protein Artificiall dimer linked via 148 position
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5BTO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 300 Condition C6 of the PACT Premier screen:
0.1 M PCTP Buffer, pH 9.0, 25% PEG 1500
Crystal Properties Matthews coefficient Solvent content 3.02 59.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.8 α = 90 b = 99.8 β = 90 c = 108.92 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-01-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 67.71 100 0.079 1 22.9 21.8 41916 41.03
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5BTO 1.96 67.71 41916 2231 100 0.18104 0.17952 0.1868 0.20895 0.2156 RANDOM 50.833
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 0.33 0.66 -2.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.182 r_dihedral_angle_3_deg 13.131 r_dihedral_angle_4_deg 12.142 r_dihedral_angle_1_deg 7.057 r_long_range_B_refined 5.956 r_long_range_B_other 5.949 r_scangle_other 3.453 r_scbond_it 2.266 r_scbond_other 2.263 r_mcangle_it 2.188
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.182 r_dihedral_angle_3_deg 13.131 r_dihedral_angle_4_deg 12.142 r_dihedral_angle_1_deg 7.057 r_long_range_B_refined 5.956 r_long_range_B_other 5.949 r_scangle_other 3.453 r_scbond_it 2.266 r_scbond_other 2.263 r_mcangle_it 2.188 r_mcangle_other 2.188 r_angle_refined_deg 1.868 r_mcbond_other 1.563 r_mcbond_it 1.562 r_angle_other_deg 0.961 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3623 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing