5OEO
Solution structure of the complex of TRPV5(655-725) with a Calmodulin E32Q/E68Q double mutant
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 220 uM 13C/15N Calmodulin, 220 uM hTRPV5(655-725) | 95% H2O/5% D2O | 84 mM | 7.4 | 1 atm | 308 | Bruker AVII 800 |
2 | 3D 1H-13C NOESY aliphatic | 220 uM 13C/15N Calmodulin, 220 uM hTRPV5(655-725) | 95% H2O/5% D2O | 84 mM | 7.4 | 1 atm | 308 | Bruker AVII 800 |
3 | 3D 1H-13C NOESY aromatic | 220 uM 13C/15N Calmodulin, 220 uM hTRPV5(655-725) | 95% H2O/5% D2O | 84 mM | 7.4 | 1 atm | 308 | Bruker AVII 800 |
4 | 3D 1H-13C NOESY aliphatic | 380 uM [U-99% 15N] Calmodulin, 380 uM [U-99% 13C; U-99% 15N] hTRPV5(655-725) | 95% H2O/5% D2O | 84 mM | 7.4 | 1 atm | 308 | Bruker AVII 800 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVI | 500 |
2 | Bruker | AVIII | 600 |
3 | Bruker | AVII | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CYANA | |
molecular dynamics | Refinement using log-normal potentials as described by Bordeaux et al, 2011 | YASARA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 120 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (medoid) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CcpNmr Analysis | 2.4 | CCPN |
5 | chemical shift assignment | AnalysisAssign | 3.0 | CCPN |
2 | structure calculation | CYANA | 3.97 | Guntert, Mumenthaler and Wuthrich |
4 | peak picking | CcpNmr Analysis | 2.4 | CCPN |
6 | refinement | YASARA | 15.6 | Yasara Biosciences; Krieger et al. |
7 | data analysis | NMRPipe | 7.9 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
8 | processing | NMRPipe | 7.9 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |