5Z95

Structural basis for specific inhibition of highly sensitive ShHTL7 receptor


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5CBK 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52981 M Lithium Sulfate, 0.1 M HEPES pH 7.5
Crystal Properties
Matthews coefficientSolvent content
3.2462.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.59α = 90
b = 92.59β = 90
c = 80.26γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-01-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSOLEIL BEAMLINE PROXIMA 10.9789SOLEILPROXIMA 1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.280.1999.9824.569.9115730
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.21.24

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5CBK1.280.19115730609199.820.129650.128910.1434RANDOM16.227
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.17-0.08-0.170.54
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.173
r_sphericity_free25.909
r_dihedral_angle_4_deg18.183
r_dihedral_angle_3_deg12.99
r_sphericity_bonded10.768
r_dihedral_angle_1_deg6.188
r_long_range_B_refined3.09
r_long_range_B_other2.709
r_scangle_other2.565
r_rigid_bond_restr2.011
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.173
r_sphericity_free25.909
r_dihedral_angle_4_deg18.183
r_dihedral_angle_3_deg12.99
r_sphericity_bonded10.768
r_dihedral_angle_1_deg6.188
r_long_range_B_refined3.09
r_long_range_B_other2.709
r_scangle_other2.565
r_rigid_bond_restr2.011
r_scbond_it1.961
r_scbond_other1.961
r_angle_refined_deg1.685
r_mcangle_other1.442
r_mcangle_it1.441
r_angle_other_deg1.04
r_mcbond_it1.016
r_mcbond_other1.007
r_chiral_restr0.107
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_gen_planes_other0.003
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2088
Nucleic Acid Atoms
Solvent Atoms289
Heterogen Atoms47

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing