Experiment: 5LIT

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
other	Other		AAATTT

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6	277.1	10 mM Magnesium Acetate

Crystal Properties
Matthews coefficient	Solvent content
2.22	44.52

Symmetry
Space Group	I 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2016-06-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.9787	ALBA	XALOC

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.247	36.14	92.9	0.069	0.991	14.1	6.1		16801			5.519

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.25	1.27	89.8		0.227	0.965	5.5	5.5

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	AAATTT	1.25	36.14	15741	853	92.51	0.12284	0.12053	0.13	0.16688	0.17	RANDOM	11.883

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.28		0.45	-0.04		-0.29

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	20.239
r_rigid_bond_restr	13.64
r_sphericity_bonded	6.768
r_angle_refined_deg	2.518
r_long_range_B_refined	2.382
r_angle_other_deg	1.894
r_long_range_B_other	1.824
r_scangle_other	1.704
r_scbond_it	1.457
r_scbond_other	1.456

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	20.239
r_rigid_bond_restr	13.64
r_sphericity_bonded	6.768
r_angle_refined_deg	2.518
r_long_range_B_refined	2.382
r_angle_other_deg	1.894
r_long_range_B_other	1.824
r_scangle_other	1.704
r_scbond_it	1.457
r_scbond_other	1.456
r_chiral_restr	0.122
r_gen_planes_refined	0.038
r_bond_refined_d	0.022
r_bond_other_d	0.006
r_gen_planes_other	0.003
r_dihedral_angle_1_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scangle_it

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms
Nucleic Acid Atoms	480
Solvent Atoms	165
Heterogen Atoms	85

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5LIT | pdb_00005lit