X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.129333% PEG MME 550, 0.03 M CaCl2, 4% Jeffamine, 0.1 M bis-Tris propane, pH 7.1
Crystal Properties
Matthews coefficientSolvent content
2.2745.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 122.11α = 90
b = 55.31β = 101.52
c = 73.49γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110PIXELDECTRIS PILATUS3 S 6MMIRRORS2017-05-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.11587ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.772.0197.70.070.0870.9987.942.58413108-385.618
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.72.7799.81.6041.9910.4270.572.608

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.772.011244366597.630.25980.25690.3132RANDOM97.763
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.73-7.49-4.244.65
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.634
r_dihedral_angle_3_deg18.177
r_dihedral_angle_4_deg16.485
r_dihedral_angle_1_deg7.77
r_angle_refined_deg1.506
r_angle_other_deg0.641
r_chiral_restr0.06
r_gen_planes_refined0.009
r_bond_refined_d0.008
r_gen_planes_other0.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.634
r_dihedral_angle_3_deg18.177
r_dihedral_angle_4_deg16.485
r_dihedral_angle_1_deg7.77
r_angle_refined_deg1.506
r_angle_other_deg0.641
r_chiral_restr0.06
r_gen_planes_refined0.009
r_bond_refined_d0.008
r_gen_planes_other0.002
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3584
Nucleic Acid Atoms
Solvent Atoms5
Heterogen Atoms81

Software

Software
Software NamePurpose
XSCALEdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Cootmodel building