X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29320 % PEG 3350 0.2 M Sodium Thiocyanate
Crystal Properties
Matthews coefficientSolvent content
2.6453.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 106α = 90
b = 119.7β = 90
c = 182.18γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2016-12-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.93DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2100.410013.313.3117960

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.2100.04112028583799.910.211350.208220.27086RANDOM36.978
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.010.320.68
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.799
r_dihedral_angle_4_deg16.159
r_dihedral_angle_3_deg14.568
r_dihedral_angle_1_deg7.714
r_long_range_B_other5.766
r_long_range_B_refined5.765
r_scangle_other4.357
r_mcangle_it3.974
r_mcangle_other3.973
r_scbond_it3.079
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.799
r_dihedral_angle_4_deg16.159
r_dihedral_angle_3_deg14.568
r_dihedral_angle_1_deg7.714
r_long_range_B_other5.766
r_long_range_B_refined5.765
r_scangle_other4.357
r_mcangle_it3.974
r_mcangle_other3.973
r_scbond_it3.079
r_scbond_other3.079
r_mcbond_it2.808
r_mcbond_other2.807
r_angle_refined_deg1.773
r_angle_other_deg1.042
r_chiral_restr0.108
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14907
Nucleic Acid Atoms
Solvent Atoms538
Heterogen Atoms232

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
Aimlessdata scaling
PHENIXphasing