☰ Navigation Tabs
Elongated conformer of the human copper chaperone for SOD1 complexed with human SOD1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FOL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 0.1 M MES pH 6.0
0.2 M Magnesium chloride
20 % (w/v) PEG 6000
Crystal Properties Matthews coefficient Solvent content 3.5 64.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.481 α = 90 b = 172.481 β = 90 c = 219.244 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-09-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97857 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.05 44.19 100 0.13 0.135 0.036 0.999 18.7 14.1 24090 82
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.05 3.21 100 1.429 1.481 0.384 0.693 1.9 14.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6FOL 3.05 44.19 22855 1234 99.94 0.20134 0.19867 0.2029 0.24628 0.2446 RANDOM 92.053
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 0.49 0.99 -3.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.727 r_dihedral_angle_4_deg 16.817 r_dihedral_angle_3_deg 15.161 r_long_range_B_refined 12.927 r_long_range_B_other 12.926 r_mcangle_it 9.819 r_mcangle_other 9.818 r_scangle_other 9.258 r_dihedral_angle_1_deg 7.185 r_mcbond_it 6.417
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.727 r_dihedral_angle_4_deg 16.817 r_dihedral_angle_3_deg 15.161 r_long_range_B_refined 12.927 r_long_range_B_other 12.926 r_mcangle_it 9.819 r_mcangle_other 9.818 r_scangle_other 9.258 r_dihedral_angle_1_deg 7.185 r_mcbond_it 6.417 r_mcbond_other 6.414 r_scbond_other 5.97 r_scbond_it 5.969 r_angle_refined_deg 1.46 r_angle_other_deg 0.945 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5929 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing